Domain Ecosystems

Bioinformatics (Bioconductor) DESeq2, edgeR, limma, GenomicRanges, Biostrings, SummarizedExperiment, Seurat (single-cell), phyloseq Epidemiology / clinical

survival, epitools, EpiEstim, incidence2, tableone, gtsummary, pharmaverse (admiral, CDISC) Finance & econometrics

quantmod, tidyquant, PerformanceAnalytics, xts, rugarch, plm (panel), fixest, AER, vars

brms, rstanarm, cmdstanr, bayesplot, tidybayes, loo Survey statistics survey, srvyr Psychometrics & SEM psych, lavaan, mirt, semTools Causal inference

MatchIt, WeightIt, marginaleffects, dagitty, ggdag, did, rdrobust, grf vegan, unmarked, dismo/terra Social networks

igraph, tidygraph, ggraph, statnet Experimental design DoE.base, agricolae, AlgDesign Sports / web data nflfastR, worldfootballR, rtweet

optim(), optimx, lpSolve, ompr, nloptr, CVXR Simulation & OR

simmer (discrete-event), deSolve (ODEs) Image / audio magick, imager, tuneR, av Deep learning torch, luz, keras3, tensorflow